PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912706.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26871.4 Da    PI: 9.2179
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912706.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  XP_010912706.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 59
                    79***********************************************95 PP

2K-box109.82.9e-36791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     sg+ ++   ++++qqe+akL+ +i+ Lq+ +Rhl+G++L+sL++keL+qLe++Le+++++iRskK+ell+++ie++qk+e elq++n+ Lr+k++
  XP_010912706.1  79 SGSIVDVDSQQYYQQESAKLRHQIQILQNANRHLMGDSLGSLTVKELKQLENRLERGITRIRSKKHELLFAEIEYMQKRELELQNANMHLRAKIA 173
                     4444777889***********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_010912706.1 174 E 174
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.978161IPR002100Transcription factor, MADS-box
CDDcd002653.64E-45275No hitNo description
SuperFamilySSF554557.33E-33274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.71588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRLYEYSNN  60
SIKSTIERYK KACANTSNSG SIVDVDSQQY YQQESAKLRH QIQILQNANR HLMGDSLGSL  120
TVKELKQLEN RLERGITRIR SKKHELLFAE IEYMQKRELE LQNANMHLRA KIAETERAQQ  180
VSIIEAGHEF DALPGFDSRN YYHVSMLEAA PHYSHQQDQT ALHLGYEAKA DPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q3e-21169169Myocyte-specific enhancer factor 2B
1tqe_R3e-21169169Myocyte-specific enhancer factor 2B
1tqe_S3e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912706.11e-174PREDICTED: MADS-box transcription factor 21-like
RefseqXP_010912707.11e-174PREDICTED: MADS-box transcription factor 21-like
SwissprotQ8RU311e-111MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLQ5KT551e-154Q5KT55_9ASPA; MADS-box transcription factor
STRINGGSMUA_Achr5P16870_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein